Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs71372065 chr9:78941039 TCAA/T 5.65E-5 288 25.58 29.67 7.27 KM Plot
KIRP rs71380227 chr16:1024365 G/A 2.54E-9 278 26.77 22.68 10.97 KM Plot
KIRP rs71380228 chr16:1024383 T/C 2.54E-9 278 26.77 22.68 10.97 KM Plot
KIRP rs71388529 chr16:3654757 T/G 0.000126 283 26.1 22.02 19.9 KM Plot
KIRP rs71414764 chr2:128464436 G/A 1.17E-6 288 25.97 23.43 8.47 KM Plot
KIRP rs7148015 chr14:70438637 C/T 0.000108 289 6.28 17.47 26.4 KM Plot
KIRP rs71537572 chr6:27970715 T/C 2.01E-8 288 25.62 26.4 9.77 KM Plot
KIRP rs71543807 chr7:7059147 CAAACCAGGTG/C 8.19E-5 277 24.8 26.7 19.17 KM Plot
KIRP rs71543808 chr7:7065677 G/GT 6.09E-5 285 24.8 27.15 19.17 KM Plot
KIRP rs71546588 chr6:27971449 GC/G 2.01E-8 288 25.62 26.4 9.77 KM Plot
KIRP rs71546598 chr6:28072877 CCGACCTGGT/C 1.6E-8 287 25.6 29.2 9.77 KM Plot
KIRP rs71548333 chr6:28397676 AAC/A 2.43E-8 282 25.57 28.02 9.77 KM Plot
KIRP rs715579 chr22:21221805 A/G 5.58E-7 289 23.97 35.67 17.48 KM Plot
KIRP rs71559038 chr6:27640989 A/G 1.21E-8 288 25.58 29.2 9.77 KM Plot
KIRP rs71559050 chr6:27797416 C/A 1.23E-8 289 25.62 27.78 9.77 KM Plot